1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGTATTGACCCCTGATGAGAGTAATGGTACGGATCTTCAGTATGACCAGGAAGAAGGTGGATCAAGTAATCATCCAGTGGAGAATGGGACGATTTCAAgtaagaacctttgcttcagctttggtttatctgcatccacctctataggatttgtgtttgtagatagtttaacaccaatattaaatacagcttcgtcaaatctgttgtttgatattattgctctttgaagttaaattcccttaaaaacatggttcttcgtaatgggtgtctcagtggattttcttttactgaattgcag
species | Physcomitrella patens |
transcript | PP1S9_204V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAAGAAGGTGGATCAAGTAATCATCCAGTGGAGAATGGGACGATTTCAA CCGATGGTTATGAAGATCCGCAGACTGCAATGCTCAAGAAAACGTTGGAAA
genomic: GGAAGAAGGTGGATCAAGTAATCATCCAGTGGAGAATGGGACGATTTCAAgtaagaacct ... tgaattgcagCCGATGGTTATGAAGATCCGCAGACTGCAATGCTCAAGAAAACGTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTATTGACCCCTGATGAGAGTAATGGTACGGATCTTCAGTATGACCAGGAAGAAGGTGGATCAAGTAATCATCCAGTGGAGAATGGGACGATTTCAAgtaagaacctttgcttcagctttggtttatctgcatccacctctataggatttgtgtttgtagatagtttaacaccaatattaaatacagcttcgtcaaatctgttgtttgatattattgctctttgaagttaaattcccttaaaaacatggttcttcgtaatgggtgtctcagtggattttcttttactgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA