1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGACAATTGATAAGTCCACAGTGCAGTCCCACCTGGGGGTGTACCCTTTCGATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttcaggacgatgacggaacattctcttaaatttccctgaagcttcacatcgcacggttcatgtgagcatgctacatcctcctattcaaaacgatgtctcgaattgtacag
species | Physcomitrella patens |
transcript | PP1S78_8V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTCTACCTGCAAAATCATTCG GCCTGCAAGATCGAAGCATTGTAGCATNTGCAACAAATGCGTGGCTCGTTTEST: gi|162167447|gb|FC343150.1|FC343150
genomic: TGCTCTACCTGCAAAATCATTCGgtaagtttca ... aattgtacagGCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
EST: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCG GCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTTEST: gi|162167446|gb|FC343149.1|FC343149
genomic: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttca ... aattgtacagGCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
EST: GAAAACCTGCTCTACCTGCAAAATCTTTCG GCNTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTTEST: gi|208390790|gb|DC938383.1|DC938383
genomic: GAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttca ... aattgtacagGCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
EST: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCG GCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTTEST: gi|208373870|gb|DC956344.1|DC956344
genomic: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttca ... aattgtacagGCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
EST: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCG GCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
genomic: GATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttca ... aattgtacagGCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAATTGATAAGTCCACAGTGCAGTCCCACCTGGGGGTGTACCCTTTCGATGGTGTTCTCTATGAGGAGAAAACCTGCTCTACCTGCAAAATCATTCGgtaagtttcaggacgatgacggaacattctcttaaatttccctgaagcttcacatcgcacggttcatgtgagcatgctacatcctcctattcaaaacgatgtctcgaattgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA