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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTGCGATGAGCGGACTAACTGCGGATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAACGCAGgtgatgttttgttttatttttggttttggtatgctttcttctgttgggattaaactgtgaattctagaaatttactgcaacatgctctgtgtgcaatatt...

Basic information

species Physcomitrella patens
transcript PP1S65_295V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S65_295V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ29212 (Selaginella moellendorffii), 5'ss of exon 4
TCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTGCGATGAGCGGACTAACTGCGGATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAACGCAGgtgatgttttgttttatttttggttttggtatgctttcttctgttgggatt--aaactgtgaattctagaaatttactgcaacatgctctgtgtgcaatatt
  |||||||||||||| ||||||  ||| || |||||||| ||||| || || | ||| |||||||||||||| || |||||||  ||          |   ||   |  | ||  ||| |  | ||      |||||| |  ||  || |  |||  |||  |||| | |                               
-GGAGAAGATCATGGAGATCGATACGCACATAGGGTGTGCTATGAGTGGCCTCATTGCCGATGCTCGCACGCTGGTGGAGCATGCACG----------AAACGAAACTCAGgttggtttctaatctt------ctttctccacttccgactgaaaatggtgtcttctcgcag------------------------------

upper sequence: PP1S65_295V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ13773 (Selaginella moellendorffii), 5'ss of exon 4
TCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTGCGATGAGCGGACTAACTGCGGATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAACGCAGgtgatgttttgttttatttttggttttggtatgctttcttctgttgggatt--aaactgtgaattctagaaatttactgcaacatgctctgtgtgcaatatt
  |||||||||||||| ||||||  ||| || |||||||| |||||||| || | ||| |||||||||||||| || |||||||  ||     |||| |  | | |||   || || | ||            |||| | |  ||| || |  |||  |||  |||| | |                               
-GGAGAAGATCATGGAGATCGATACGCACATAGGGTGTGCTATGAGCGGCCTCATTGCCGATGCTCGCACGCTGGTGGAGCATGCACG----AAACGAAACTCAGgttgctttctaatctt------------ctttttccacttgcgactgaaaatggtgtcttctcgcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208356707|gb|DC902539.1|DC902539
EST:     GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAAACGCAGAATCACAG                         ATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT
genomic: GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGG-AA--C-G-----CAGgtgatgtttt ... agaatcacagATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT
EST: gi|208376352|gb|DC932262.1|DC932262
EST:     GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAAACGCAGAATCACAG                         ATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT
genomic: GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGG-AA--C-G-----CAGgtgatgtttt ... agaatcacagATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT
EST: gi|162202744|gb|FC379037.1|FC379037
EST:     GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGGAAACGCAGAATCACAG                         ATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT
genomic: GATGCTCGCACGCTTGTTGAGCATGGGCGTGTGG-AA--C-G-----CAGgtgatgtttt ... agaatcacagATTCTCCTACAATGAGCCAATGAGTGTAGAATCTACTACACAAGCTCTGT