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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTATTGCATTTCCTGCGCCATTCACTCCCACGTAGTCCGTGTACGTTCCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttgtcatatcaaattcttgttttgtttgaaaatggttttgctttctcggtctttgtgaagaaggcagaattagatccggttaattattctatg...

Basic information

species Physcomitrella patens
transcript PP1S375_10V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424755|gb|BY976799.1|BY976799
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67721336|gb|BJ971595.1|BJ971595
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|15320073|gb|BI487602.1|BI487602
EST:     GAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: GAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|19790373|gb|BQ041838.1|BQ041838
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67718495|gb|BJ968754.1|BJ968754
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67726318|gb|BJ976577.1|BJ976577
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67704664|gb|BJ964897.1|BJ964897
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162212775|gb|FC388575.1|FC388575
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67700337|gb|BJ960570.1|BJ960570
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|18360385|gb|BJ192447.1|BJ192447
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162232635|gb|FC409186.1|FC409186
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67578206|gb|BJ950373.1|BJ950373
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|161982662|gb|EE296433.1|EE296433
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162269890|gb|FC445914.1|FC445914
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67723609|gb|BJ973868.1|BJ973868
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|15327410|gb|BI488049.1|BI488049
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67726053|gb|BJ976312.1|BJ976312
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67702832|gb|BJ963065.1|BJ963065
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162202640|gb|FC378985.1|FC378985
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67722033|gb|BJ972292.1|BJ972292
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67724549|gb|BJ974808.1|BJ974808
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|37837074|gb|BJ595082.1|BJ595082
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67576802|gb|BJ949626.1|BJ949626
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162222274|gb|FC397710.1|FC397710
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67727685|gb|BJ977944.1|BJ977944
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67717538|gb|BJ967797.1|BJ967797
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67709536|gb|BJ965352.1|BJ965352
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67719391|gb|BJ969650.1|BJ969650
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67720355|gb|BJ970614.1|BJ970614
EST:     CCTGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162232634|gb|FC409185.1|FC409185
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|37846250|gb|BJ604258.1|BJ604258
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGGC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTG-C
EST: gi|37838525|gb|BJ596533.1|BJ596533
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67717812|gb|BJ968071.1|BJ968071
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|7147921|gb|AW509843.1|AW509843
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67712841|gb|BJ966290.1|BJ966290
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|67701073|gb|BJ961306.1|BJ961306
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|162202641|gb|FC378986.1|FC378986
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
EST: gi|18357712|gb|BJ189771.1|BJ189771
EST:     CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAG                         GAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC
genomic: CCCGTGAGGCACGTAGGGTTCGTGAGCCACCCCAGAGGTTCAGGCGCAAGgtcagtgttg ... ttccatgcagGAGGATGGACCGCCACGTGCCCCAGGAGCTCCTGGCGCCCGACCTGGTGCC