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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGTCACAAGACGTGCTATTTATATCGTTCGAAAGATATAAATTTTGTGTTCTTCAATGGGATGCAGAAACCGGCTCACCTATTACACGgtaaaaaactggactttcattatgacgtcctttagttcagttggtcgagtcacttagtgtcatatcttttacccttctactttccctgtcttggacgttctcaaagtaaacattctcagtagtgcatacttctcagttgtcgtaatggttaaatgcag

Basic information

species Physcomitrella patens
transcript PP1S203_55V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S203_55V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGAGTCACAAGACGTGCTATTTATATCGTTCGAAAGATATAAATTTTGTGTTCTTCAATGGGATGCAGAAACCGGCTCACCTATTACACGgtaaaaaactggactttcattatgacgtcctttagttcagttggtcga-gtcacttagtgtcatatctttta---cccttctactttccctgtcttggacgttctcaaagtaaacattctcagtagtgcatacttctcagttgtcgtaatggttaaatgcag
|||||  |||||||| |  | ||| |  |    |||||||||||||| ||||||||||||||||||   ||  ||      | ||||||| |||| |    | | |      |||  |  | |||| | || |  |  || || |   |     || | || ||   |  || || |   | |||  ||   |||                                                           
GGTGAAGCACAAGACTTTTTGTTTGTTGCAACTGAAAGATATAAATTCTGTGTTCTTCAATGGGATTATGAGTCCTCTGAGCTTATTACAAGgtatag--ttagccagaagatat--caacttttaatgcaatcagatgaagtaaagcaactggatgtgttatatgtcttttataatactcttgtaatgttagtta----------------------------------------------------------

upper sequence: PP1S203_55V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 4
GGTGAGTCACAAGACGTGCTATTTATATCGTTCGAAAGATATAAATTTTGTGTTCTTCAATGGGATGCAGAAACCGGCTCACCTATTACACGgtaaaaaactggactttcattatgacgtcctttagttcagttggtcgagtcactta--gtgtcatatcttttacccttctactttccctgtcttggacgttctcaaagtaaacattctcagtagtgcatacttctcagttgtcgtaatggttaaatgcag
|| ||  |||||||  | ||||| ||  |    |||||||| || |||||||||||||||||||||||||| |          ||||||| |||  ||   || |     |     ||  | |||| || ||| | ||   ||| |||   |||    | |  ||   | | ||| |       |   || || || |                                                      
GGCGAAGCACAAGATTTTCTATTCATCGCAACTGAAAGATACAAGTTTTGTGTTCTTCAATGGGATGCAGAGAATTCTGAGGTTATTACAAGgtttaagcatgaa-----acagaaacaacatttactttagt-gttcatttcatttatgatgttccgtttgctagtttaccactattttaagttattacattttcta------------------------------------------------------