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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaattcacagttctagtggaattctcatcaagggtcgcattagacttcctttgtggtctttcggtgtcttcacatcgaagctctcgcttaacatgtaaagtaagtcattgcatcagagaatagttgaaggtgactgaagacttaatgatgtttctgtatgtacag

Basic information

species Physcomitrella patens
transcript PP1S180_53V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18324844|gb|BJ156839.1|BJ156839
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|208374343|gb|DC941156.1|DC941156
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|100392407|gb|BY953347.1|BY953347
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|100358061|gb|BY965452.1|BY965452
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|100404244|gb|BY955328.1|BY955328
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|208376225|gb|DC914510.1|DC914510
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
EST: gi|100398077|gb|BY954076.1|BY954076
EST:     AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG                         GGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA
genomic: AAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAGgtatttcaat ... gtatgtacagGGGCCTGCAAGTCATAATCCTTTGGCTTATAAATACTATAATGCTGAGGAA