1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGAATTTCAACGACGTGTACATTGTATACGAGTTGATGGATACGGACCTACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacatatacctttaattagagattttggttgtgttttaacttctatgcttgtgacctgagtatcgttaagatgatgtaaaagctagaaaactcta...
species | Physcomitrella patens |
transcript | PP1S149_39V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAG TATTTTCTGTATCANATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAACEST: gi|162154102|gb|FC330545.1|FC330545
genomic: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacat ... ttggattcagTATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAAC
EST: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAG TATTTTCTGTATCANATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAACEST: gi|22133027|gb|BQ827504.1|BQ827504
genomic: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacat ... ttggattcagTATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAAC
EST: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAG TATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAACEST: gi|67508267|gb|BJ941136.1|BJ941136
genomic: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacat ... ttggattcagTATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAAC
EST: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAG TATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAACEST: gi|100357153|gb|BY983720.1|BY983720
genomic: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacat ... ttggattcagTATTTTCTGTATCAAATCTTGCGGGGCTTGAAGTACATCCATTCGGCGAAC
EST: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAG TATTTTCTGTATCAAATCTTGCGGGG
genomic: TACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacat ... ttggattcagTATTTTCTGTATCAAATCTTGCGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAATTTCAACGACGTGTACATTGTATACGAGTTGATGGATACGGACCTACACCAGATCATTCGTTCAAATCAAGCTCTCACAGAAGACCACTGTCAGgttgagacatatacctttaattagagattttggttgtgttttaacttctatgcttgtgacctgagtatcgttaagatgatgtaaaagctagaaaactcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT