1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCTGAGTCAAAAGCCACCACTGAAAGTGTCTACAACAACGCTTTGGCGTTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattctaaaattttgtttgatggtgctctttaattattttgttgtatgttcaattgttcggatctgttgaaacgatgcggccgttataggatgag...
species | Physcomitrella patens |
transcript | PP1S134_62V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGGEST: gi|162189283|gb|FC366766.1|FC366766
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTTGGEST: gi|37835138|gb|BJ593150.1|BJ593150
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: AGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGGEST: gi|162173947|gb|FC349747.1|FC349747
genomic: AGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTTGGEST: gi|162151664|gb|FC327793.1|FC327793
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTTGGEST: gi|37840874|gb|BJ598882.1|BJ598882
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGGEST: gi|18358449|gb|BJ190508.1|BJ190508
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
EST: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGA TGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
genomic: TTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattc ... ttatttgcagTGCACGGCGTGGCAGAATCTACCTCCCACAAGATGAACTGGCGCGTTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTGAGTCAAAAGCCACCACTGAAAGTGTCTACAACAACGCTTTGGCGTTAGGAATCGCAAACCAGCTTACAAATATCCTGCGGGATGTCGGAGAAGAgtaagaattctaaaattttgtttgatggtgctctttaattattttgttgtatgttcaattgttcggatctgttgaaacgatgcggccgttataggatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA