1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAAGAATCGGTGCTTGGAGAGCCTTCAAGAGAACGTTAACCGTCTTAACACCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtgacatctctcttctagttttgatttttatctgctatgaaacatcgtcgaagtgaagatcgtgaaacataagttttgttaaaatgaaatatac...
species | Physcomitrella patens |
transcript | PP1S126_52V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162218145|gb|FC394982.1|FC394982
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162243608|gb|FC421807.1|FC421807
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|18338986|gb|BJ171012.1|BJ171012
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67700459|gb|BJ960692.1|BJ960692
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|37831315|gb|BJ589327.1|BJ589327
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67699691|gb|BJ959924.1|BJ959924
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67699716|gb|BJ959949.1|BJ959949
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162252357|gb|FC426165.1|FC426165
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162274823|gb|FC450850.1|FC450850
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67574166|gb|BJ946990.1|BJ946990
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162270108|gb|FC446184.1|FC446184
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67698454|gb|BJ958687.1|BJ958687
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67696535|gb|BJ956768.1|BJ956768
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|18351988|gb|BJ184040.1|BJ184040
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67697564|gb|BJ957797.1|BJ957797
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162243609|gb|FC421808.1|FC421808
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162252356|gb|FC426164.1|FC426164
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67573151|gb|BJ945975.1|BJ945975
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162274992|gb|FC450851.1|FC450851
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67572987|gb|BJ945811.1|BJ945811
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67696367|gb|BJ956600.1|BJ956600
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|67575015|gb|BJ947839.1|BJ947839
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGAEST: gi|162218146|gb|FC394983.1|FC394983
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
EST: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAG GCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
genomic: CCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtga ... gttttctaagGCCGGGGACTCGAGTGCTGAGGAGTTATCGAGCTTCACCCAGGTGATCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGAATCGGTGCTTGGAGAGCCTTCAAGAGAACGTTAACCGTCTTAACACCTACAGGGCTAAGTTGGTTGTGTTCCCTAGACGCTCAAAGAAGACCAAGgtatgcgtgacatctctcttctagttttgatttttatctgctatgaaacatcgtcgaagtgaagatcgtgaaacataagttttgttaaaatgaaatatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa