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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTCTCTTTGCATATCAGAAGGAGCAGGCTCGCCTTTCACCGGACGGCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTGgtgagtgtacgattaagtctgaattttattgtacactcaaatactatattttgaattctgttatgaattttggaacagagtccgataatttctactgatttacttggtttttgttttttgcacgtttatctcaaag

Basic information

species Physcomitrella patens
transcript PP1S9_317V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100406113|gb|BY991546.1|BY991546
EST:     GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTG                         TGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
genomic: GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTGgtgagtgtac ... tatctcaaagTGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
EST: gi|208396371|gb|DC911946.1|DC911946
EST:     GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTG                         TGGGTACGCCCGCTTCATGGCACAGACGANGAGGCCAAGATGATAACTGCA
genomic: GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTGgtgagtgtac ... tatctcaaagTGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
EST: gi|100356505|gb|BY946399.1|BY946399
EST:     GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTG                         TGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
genomic: GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTGgtgagtgtac ... tatctcaaagTGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
EST: gi|162252662|gb|FC428699.1|FC428699
EST:     CGCCTGATCATGTTCTGAATGTG                         TGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
genomic: CGCCTGATCATGTTCTGAATGTGgtgagtgtac ... tatctcaaagTGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
EST: gi|100418237|gb|BY993400.1|BY993400
EST:     GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTG                         TGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA
genomic: GCCAGCAATTAGCTTATTTGGGTCCCTCGCCTGATCATGTTCTGAATGTGgtgagtgtac ... tatctcaaagTGGGTACGCCCGCTTCATGGCACAGACGAGGAGGCCAAGATGATAACTGCA