1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTATGTTCAGTATCACCGGTCTCGAGTTTGCGTACTCTCAAGCCCCTGATTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgcacacaatactagcactactcattgcaatttgacccttgagattatcgtgatccatgtctatttttatttttattttttttcaagtaagcaggtatttgtatccgcactggttgtggtgatcaagcccactgctacctgcacagaagtcttataactctcactggtggcttggaaatgcag
species | Physcomitrella patens |
transcript | PP1S9_211V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAG GCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCAAEST: gi|18340589|gb|BJ172617.1|BJ172617
genomic: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgca ... ggaaatgcagGCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGA
EST: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAG GCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGAEST: gi|162247473|gb|FC425039.1|FC425039
genomic: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgca ... ggaaatgcagGCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGA
EST: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAG GCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCAAEST: gi|208375255|gb|DC948780.1|DC948780
genomic: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgca ... ggaaatgcagGCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGA
EST: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAG GCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGA
genomic: TTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgca ... ggaaatgcagGCAATTTTGTGACAGTAGCGCTTGTGGCTATAATTGGAAATAGTCTCTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGTTCAGTATCACCGGTCTCGAGTTTGCGTACTCTCAAGCCCCTGATTCCATGAAAGCTGTTGTGCAGGCTGCATGGCTCTTCACTGTATCTGCAGgtaaagcgcacacaatactagcactactcattgcaatttgacccttgagattatcgtgatccatgtctatttttatttttattttttttcaagtaagcaggtatttgtatccgcactggttgtggtgatcaagcccactgctacctgcacagaagtcttataactctcactggtggcttggaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG