1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCAGTTGCAGAGCTGCAGCGGCACCAAGCATGTGTTAATTCTGTCGCCTGGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttattgaagtcaaccaaccgttgatttttcttctacgtgacgcaaataagattgggatgtatgctcatctttggaattcttttctatccatctgctcttcgtctactgccgcagcattctcttacgtgcaatttcaaccttgcacag
species | Physcomitrella patens |
transcript | PP1S92_5V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTGEST: gi|67692898|gb|BJ953131.1|BJ953131
genomic: TCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
EST: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTGEST: gi|208380741|gb|DC919443.1|DC919443
genomic: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
EST: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTGEST: gi|162279546|gb|FC455324.1|FC455324
genomic: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
EST: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAG GCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
genomic: GGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttatt ... ccttgcacagGCTCTTATTTGGGATTTATCATCGATCAGCCAGCCTGTAGAGGGCAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGTTGCAGAGCTGCAGCGGCACCAAGCATGTGTTAATTCTGTCGCCTGGGCTCCTCACAGCCCTTGTCACATATGCACTGCTGGAGATGATTCCCAGgtactttattgaagtcaaccaaccgttgatttttcttctacgtgacgcaaataagattgggatgtatgctcatctttggaattcttttctatccatctgctcttcgtctactgccgcagcattctcttacgtgcaatttcaaccttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG