1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGGAATAGTATCTACTTCATAACTCTAGGATTGCTTCGATTTGAGTCTCCCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctctcactcattttcttgaactttaaaaataataataataagccttctctgtatagcacatattattattgtacacactcttgctgaatgttttcgctttcatgtgaccgactttctcaatctgacaatttccacgcgtcttgcag
species | Physcomitrella patens |
transcript | PP1S79_119V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162183031|gb|FC360597.1|FC360597
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCCTCTTT-GACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACEST: gi|162264786|gb|FC440353.1|FC440353
genomic: CGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCC-TCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCAC
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162192850|gb|FC369662.1|FC369662
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162183030|gb|FC360596.1|FC360596
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162246112|gb|FC421923.1|FC421923
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162196348|gb|FC373026.1|FC373026
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162246113|gb|FC421924.1|FC421924
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162182268|gb|FC357139.1|FC357139
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162192851|gb|FC369663.1|FC369663
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162273185|gb|FC449205.1|FC449205
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162273186|gb|FC449206.1|FC449206
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162150582|gb|FC326438.1|FC326438
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162251432|gb|FC425552.1|FC425552
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162196349|gb|FC373027.1|FC373027
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|162256233|gb|FC432289.1|FC432289
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTTEST: gi|208365934|gb|DC955481.1|DC955481
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
EST: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACG GCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
genomic: CCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctc ... cgtcttgcagGCTGGCTGGAAGCTGTGGCCCTTTGCGCATCTTATCACGTATGGTTTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAATAGTATCTACTTCATAACTCTAGGATTGCTTCGATTTGAGTCTCCCGTTAGGATACTCAAGGATTTAAGAGAAACATTCTTCCCTCTTTTGACGgtaaggcctctcactcattttcttgaactttaaaaataataataataagccttctctgtatagcacatattattattgtacacactcttgctgaatgttttcgctttcatgtgaccgactttctcaatctgacaatttccacgcgtcttgcag
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