1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAAAGGTAGAACCTGTAAAGAGTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAGgtatcccgctcacacatgttgtatgtcctaaggtggacgaagtagaaatggtcgttttcttgacagagagcgtcatctgttgtatttatttttctattga...
species | Physcomitrella patens |
transcript | PP1S79_108V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAG GCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACTEST: gi|67698655|gb|BJ958888.1|BJ958888
genomic: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAGgtatcccgct ... ggctgtacagGCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACT
EST: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAG GCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACTEST: gi|208361620|gb|DC950322.1|DC950322
genomic: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAGgtatcccgct ... ggctgtacagGCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACT
EST: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAG GCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACT
genomic: GTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAGgtatcccgct ... ggctgtacagGCGTCCTCATCCATCGAGTCTTCAGCACTGACGACTGAATCTACTCCGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGGTAGAACCTGTAAAGAGTGGAGCGAGCAGCGGTCGAAGAAATCGAAGGAAACGCGCTAAACTCAAGgtatcccgctcacacatgttgtatgtcctaaggtggacgaagtagaaatggtcgttttcttgacagagagcgtcatctgttgtatttatttttctattga
- - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA