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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGATTCTTCCACACACAGACTTTACTACTTCGCTTTGCCTCCTTCCGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttcgtatcattcatacctcaagtgtatttacgctcttttatcttcatcctcacggcacttttctgatattgcaatcatcccaacttcgataaaaacttctgggttgagctgaatgtgtcactgctatttcctcaacag

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389659|gb|BY952465.1|BY952465
EST:     CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA                         GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: gi|100389158|gb|BY952362.1|BY952362
EST:     CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA                         GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: gi|100442226|gb|BY981250.1|BY981250
EST:     CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA                         GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: gi|208398370|gb|DC912327.1|DC912327
EST:     CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA                         GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT