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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttattcattgcttcttaacctgatagaaagacgaaatggctatcaggaagaatctttaagattaggatttagcagggtttcaactctggggatat...

Basic information

species Physcomitrella patens
transcript PP1S58_188V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386961|gb|DC941623.1|DC941623
EST:     TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG                         GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: gi|208398913|gb|DC912072.1|DC912072
EST:     TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG                         GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: gi|18373745|gb|BJ205323.1|BJ205323
EST:     TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG                         GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: gi|18362650|gb|BJ194721.1|BJ194721
EST:     TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG                         GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT