1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAGTCGCACTTTTCAAGTCGTACTTTGGAGGGGCGTTCGATGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaaccacttcattcttcctgagcttgaaagagtataatcattttgagttacttcaaagggatgtaggatttcgttattgctgcatgcatattaac...
species | Physcomitrella patens |
transcript | PP1S54_156V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCEST: gi|100401870|gb|BY954751.1|BY954751
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|162280315|gb|FC456332.1|FC456332
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|18342109|gb|BJ174144.1|BJ174144
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTEST: gi|100404582|gb|BY973650.1|BY973650
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGT
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|18343908|gb|BJ175946.1|BJ175946
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACNAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100407280|gb|BY974093.1|BY974093
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGCAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|208385555|gb|DC937100.1|DC937100
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100429936|gb|BY978164.1|BY978164
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|67572605|gb|BJ945429.1|BJ945429
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|208361334|gb|DC935063.1|DC935063
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100384770|gb|BY950760.1|BY950760
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|162223092|gb|FC399983.1|FC399983
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100407158|gb|BY974039.1|BY974039
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGGAACEST: gi|18327379|gb|BJ159381.1|BJ159381
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGEST: gi|100387570|gb|BY988441.1|BY988441
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGG
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|67578518|gb|BJ950685.1|BJ950685
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|18328150|gb|BJ160154.1|BJ160154
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|208393441|gb|DC904059.1|DC904059
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100415400|gb|BY975297.1|BY975297
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGANTTTGAAACEST: gi|100450131|gb|CJ974109.1|CJ974109
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTCTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100450358|gb|CJ974223.1|CJ974223
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACEST: gi|100364351|gb|BY984569.1|BY984569
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
EST: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATG AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
genomic: TGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaacc ... attcgtgcagAGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTCGCACTTTTCAAGTCGTACTTTGGAGGGGCGTTCGATGAGGATGCGATCAGGAATAATTTTGTGCTCATCTACGAGCTTCTTGATGgtgtggaaccacttcattcttcctgagcttgaaagagtataatcattttgagttacttcaaagggatgtaggatttcgttattgctgcatgcatattaac
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT