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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag

Basic information

species Physcomitrella patens
transcript PP1S40_297V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os08g44380.2 (Oryza sativa), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgat-gcttgtattttcatt-attaagtgatggtcatacaa-tgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | |||||||     |||||||| ||||| |||   || ||||  |||||| | || ||||||||||||||||| ||||||||||||||||||||||| |||   | |||||    ||   ||    |||||  | |  |    ||||  || |  | |||| |   ||| ||  ||||   | |  ||||      |   ||||| |    | | | | ||     |||| |    
TGCTGTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATgtgagt---tctgttctcaacttcatggcatcagta-gtttacat---ttctgatgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgctttgcag---

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os08g44380.1 (Oryza sativa), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgat-gcttgtattttcatt-attaagtgatggtcatacaa-tgtctaagttcagtattttatctaacgtttgaatttttgtaacag--
     | |||||||     |||||||| ||||| |||   || ||||  |||||| | || ||||||||||||||||| ||||||||||||||||||||||| |||   | |||||    ||   ||    |||||  | |  |    ||||  || |  | |||| |   ||| ||  ||||   | |  ||||      |   ||||| |    | | | | ||     |||| |   |  
----GTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATGTGAgt---tctgttctcaacttcatggcatcagta-gtttacat---ttctgatgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgctttgcaggtgag

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctt-tctatttgaatgcagtatatctgaaggtgttcttgtgat-gcttgtattttcattat---taagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaattt---ttgtaacag-------------------
     | |||||||     |||||||| ||||| |||   || ||||  |||||| | || ||||||||||||||||| ||||| ||||||||||||||||| |||  || |||||     || |||| ||||| |  | || |  |      | || |       ||  | | |||   | |||  ||| | | |  ||  |||      ||| | |   |||   |||   |   ||| ||  |                   
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgt-tatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os08g44450.3 (Oryza sativa), 5'ss of exon 2
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctt-tctatttgaatgcagtatatctgaaggtgttcttgtgat-gcttgtattttcattat---taagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaattt---ttgtaacag--------------
 ||  | |||||||     |||||||| ||||| |||   || ||||  |||||| | || ||||||||||||||||| ||||| ||||||||||||||||| |||  || |||||     || |||| ||||| |  | || |  |      | || |       ||  | | |||   | |||  ||| | | |  ||  |||      ||| | |   |||   |||   |   ||| ||  |              
TGCTGTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagt-tatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatag

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || ||||||| ||||||||| |||||||| ||||| ||    |||||| | || |||||||| || || || ||||||||||| |||||||| ||||||||     |   ||  |  |   | | |||| ||   |     ||  | |  | | | | |||    |||||   | ||    |||    | ||  ||                                   
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaa---catttatctactccctttgtttca--tattataagttgcatttacttcctttacttttt---------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G023748_T02 (Zea mays), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || ||||| |  ||||| || ||||| |||||||||||    |||||| |||| |||||||||||||| || ||||| ||||| |||||||||||| || | |    ||  |   |  | |||||  ||| |   ||  | |   | |    || |  |     | ||   ||| || |   |                                                
TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcctcacatctgtataaaattaatgct-tatgttctaaaatatgactatc-cactgggctaactgtcatcttgtg-tgtttgcag-----------------------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G181194_T02 (Zea mays), 5'ss of exon 2
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattt--tcattattaagtgatggtcatacaatgtctaagttc-agtattttatctaacgtttgaatttttgtaacag
|||  ||||||||     ||||||||| ||||| |||   |||||||  || ||| |  | |||||||||||||| ||  |||||||||||||||||||||| |||  ||    |  | | |||| | ||  | |   |    |  ||||| |||  || ||  || |  | |  |||     |||    |  || |  |  |||| |  |  || |   | || || || || | |    
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCATCAACTTCCTCGTGTCTCTTCTGAAGAAGAACTGGCAGAATgtgagtg-atcctctggtctttatt-gcatcta-tgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttctaacacgttgt--gatgtatgcatctt-gcag---

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G170561_T01 (Zea mays), 5'ss of exon 6
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
||   | ||||||     ||||||||| ||||| |||   |||||||  || ||| | || |||||||||||||| ||  ||||||| |||||||||||||| |||  ||   ||  | | |||| | ||  | |   |    |   |||| |||  || ||  || |  || |  |  | |   |  ||    |    ||||   |||   |  |   | |  |  | ||| |    
CGTGGTTGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAGATGAGCGTCAACTTCCTCGTGTCTCTTCTGAAGAAAAACTGGCAGAATgtgagtg-atccattggtctttatt-gcatcta-tgccttaagaatcgttcctgttgtgtttacatcta-atgaacattttagaat-gtaagtcgaaggagttggttataacacgttgtgatgtatgtgttgcag---

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G144387_T03 (Zea mays), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattt--tcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||| | || ||||  |  |||||||| ||||| |||   |||||||  || ||| | || |||||||| || |||||  |||||||||||||||||||||| |||      | ||   |  |  | |||             |   | |  |||  || ||  || |  | |  |||     |||  ||||   ||    | ||   |||   ||     | |      | || |    
TGCCGTTGGCAACTTGGCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGATGAGCGTCAACTTCCTTGTTTCCCTTCTGAAGAAGAACTGGCAGAATgtgagtga---cgctcgccttcaccttaat-------------aaccgcttctgttgtgtttacatctaatgaacatttcagaatgtacatatgctgaaggacttggttataacatgctgtgctgtgtgctgtgcag---

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G35450.4 (Glycine max), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagta----catttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || ||   |  |||||||||||||||||||||||| ||    ||| || ||||||||||||| || ||  ||||||| ||||||||||| ||||| ||||           ||  |  |  || ||  || |   ||||  |   |  || | ||  |  | || |    ||||  || |  |  | |  | |                                          
AGCTGTGGGCAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagtagtccacactcaatatttcttaaactcattgcctctggtgccttcttttttattgtgcttttcttgaaattatatgttcttgttgctgttt------------------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgtt--cttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
     | || ||   |  |||||||||||||||||||||||| ||    ||| || ||||||||||||| || ||  ||||||| ||||||||||| ||||| ||||    |  |||   ||         || ||| ||| ||  |  |  | | || ||| |   |||| ||| |    |  | |  ||   ||||    |||   | ||||||                        
----GTGGGCAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTGAgtag---tagtccacact---------caatatttcttaaactcattgcctctggtgccttcttttttattgtgcttttcttgaaattatatgttcttgtt-gctgttttatg-----------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA12G31040.1 (Glycine max), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattatt-aagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||| | || ||   |   ||||||||||||||||||||||| ||   |||| || ||||||||||||| || ||  ||||||| ||||| |||||||| || ||||  |    ||  ||  | ||||||  |  ||   || |  |   | | |  | || |||||||  || || |||| ||| |   | | | | |  | ||  |                               
AGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagta-gtccactc--ttaaaattgaataaa--attgttgcatctaagcctattttact-gtatttttgtttttgaagttatgatttcaaatttttt--gctctat-------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 3
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgtt-cttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || ||   |  |||||||||||||||||||||||| ||    ||| || ||||||| ||||| || ||  ||||||| ||||||||||| ||||| ||||     ||      ||||    ||      | | | |||   || ||| || ||| |   ||||   |     |||||  || || | | | || ||||    || | | |                      
AGCTGTGGGGAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAATTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagta-----gtagtccactatcaatat------tttgttaagtcattgcttctggtgccttcttttttgat-----gtgattttcttaaagt-tatatgttcttgtttctgttt----------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 4
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaa-----tgcagtatatctgaagg-tgttcttgtgatgcttgt-attttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaat---ttttgtaacag-------
 ||  | || ||   |   ||||||||||||||||||||||| ||   |||| || ||||||||||||| || ||  || |||| ||||| |||||||| ||  |||  |    || | |   ||  ||     |||  ||| | |   |  | || | ||| ||| ||| | |||  |  || | |  | |  |||     ||||| || |   ||  |   || |  ||||     | | |            
AGCTGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggta-gtccactcttatgatttcaaatgttttgctctatttttatggtcttttatcgtgctgcatgtgaattttctcttttaatacttgcaatatttgatctaa-ttgaaccttccaatcaaagactgaacaaactctattcttaatttcag

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G22440.1 (Arabidopsis thaliana), 5'ss of exon 5
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  |||||||   |   |||||||| ||||| ||||| || ||    || ||| |||||||||||||||| || || |||||||| |||||||| ||||| ||||        |  ||  | ||     |  | | |||  |    ||  |  |   ||   |  |   || ||   |  ||     |                                                
TGCTGTCGGTAATCTTTCCATGGAGGAGAAGCAGATCTTTCAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTGAAGAAAAACTGGCAAAATgttagtaacaacaccctcttgaactt---ctcgatctttctccatacatttatcagtatctaaaacctgagttgttcctt--tgactgcag-----------------------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34353 (Selaginella moellendorffii), 5'ss of exon 3
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagta-catttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || |||   || |||||||| |||||  |||||||||||   ||  |  | |||||||||||||| || ||| | |||||||||||||| || |||||||  | | |  | | ||| |||    |  |  || ||     || |                                                                                        
AGCGGTGGGCAACATCGAGATGGAGGAGAAGCAGGTCTTCCAGAACGTTCAGCTCAGCGTTAACTTCCTCGTCTCGCTGCTCAAGAAGAACTGGCAAAACgtaagtagtagtagcgcttctctcttttctcgtggcttaacttcgattgattccag-----------------------------------------------------------------------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31249 (Selaginella moellendorffii), 5'ss of exon 3
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagta-catttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag
 ||  | || |||   || |||||||| |||||  |||||||||||   ||  |  | |||||||||||||| || ||| | ||||||||||||||||| |||||||  |   |  | | ||| |||    |  |  || ||     ||||                                                                                        
AGCAGTGGGCAACATCGAGATGGAGGAGAAGCAGGTCTTCCAGAACGTTCAGCTCAGCGTTAACTTCCTCGTCTCGCTGCTCAAGAAGAACTGGCAGAACgtaagtagtaggagcgcttctctcttttctcgtggcttaacttcgattgtttccag-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824616|gb|BJ582682.1|BJ582682
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAGGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|6102384|gb|AW126854.1|AW126854
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162236408|gb|FC412775.1|FC412775
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTGGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162265770|gb|FC443176.1|FC443176
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162208146|gb|FC384588.1|FC384588
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208382464|gb|DC927998.1|DC927998
EST:     AAATGGGTGTTAGCTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37835160|gb|BJ593172.1|BJ593172
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208399927|gb|DC904981.1|DC904981
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162211761|gb|FC387425.1|FC387425
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37846164|gb|BJ604172.1|BJ604172
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162203674|gb|FC378549.1|FC378549
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162207625|gb|FC384078.1|FC384078
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208356336|gb|DC914254.1|DC914254
EST:     AAATGGGTGTTAGCTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGA
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGA
EST: gi|162277750|gb|FC453589.1|FC453589
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37835317|gb|BJ593329.1|BJ593329
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162275642|gb|FC451644.1|FC451644
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162265771|gb|FC443177.1|FC443177
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162206162|gb|FC383155.1|FC383155
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162246407|gb|FC419943.1|FC419943
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162219934|gb|FC396749.1|FC396749
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162219933|gb|FC396748.1|FC396748
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208347658|gb|DC912875.1|DC912875
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|67695799|gb|BJ956032.1|BJ956032
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162208145|gb|FC384587.1|FC384587
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|67696010|gb|BJ956243.1|BJ956243
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATAATA
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATT-TA
EST: gi|37842024|gb|BJ600032.1|BJ600032
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208400389|gb|DC925027.1|DC925027
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162248093|gb|FC420098.1|FC420098
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208354514|gb|DC926649.1|DC926649
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162211762|gb|FC387426.1|FC387426
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37851150|gb|BJ609158.1|BJ609158
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162277749|gb|FC453588.1|FC453588
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37845410|gb|BJ603418.1|BJ603418
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208350513|gb|DC926466.1|DC926466
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162236409|gb|FC412776.1|FC412776
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162246408|gb|FC419944.1|FC419944
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162268991|gb|FC445483.1|FC445483
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162203675|gb|FC378550.1|FC378550
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162186775|gb|FC362811.1|FC362811
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162258972|gb|FC435915.1|FC435915
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162207624|gb|FC384077.1|FC384077
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|67572426|gb|BJ945250.1|BJ945250
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162268992|gb|FC445484.1|FC445484
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37847731|gb|BJ605739.1|BJ605739
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162234144|gb|FC410553.1|FC410553
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|208378252|gb|DC918873.1|DC918873
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|37841468|gb|BJ599476.1|BJ599476
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|7648077|gb|AW739060.1|AW739060
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
EST: gi|162186776|gb|FC362812.1|FC362812
EST:     AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAAT                         GTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC
genomic: AAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 29 (downstream exon)
Score: 44

CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacat ... tttgtaacagGTCCGAGTGTTGTACTTAAAGACAACCATGGGCACTCCGGTTCGTATTTACTAGGTTCCAGCGTATACGAGTTGAGCATTCCAATGGGTCTGAAAGACCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC