1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAGATAGCGGGTTGAAGGATGAATTGGTCTTGGGAGATCCAAAATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAGgtaactgtcaatgttgcttaagcgcattttagacgtaagttgtgatgttttaagcattacaggtgcccctctctagttaaagtagcttcagcaagcatca...
species | Physcomitrella patens |
transcript | PP1S28_304V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAG GTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTCEST: gi|100430853|gb|BY978430.1|BY978430
genomic: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAGgtaactgtca ... gcgtatgcagGTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTC
EST: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAG GTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTCEST: gi|162155602|gb|FC331540.1|FC331540
genomic: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAGgtaactgtca ... gcgtatgcagGTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTC
EST: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAG GTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTC
genomic: ATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAGgtaactgtca ... gcgtatgcagGTCCAGCTGATTTACCTTTCTTCGACCTACTCAGCATCTTTGGAAAGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGATAGCGGGTTGAAGGATGAATTGGTCTTGGGAGATCCAAAATCCCCTCGATACGTGTTGTGGGGTGGCCGATTGCGGCCTGTGCCTGCAGgtaactgtcaatgttgcttaagcgcattttagacgtaagttgtgatgttttaagcattacaggtgcccctctctagttaaagtagcttcagcaagcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG