1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattatcttaacctcgttttattgtccacccttcttcaacgacagaagtgtttccgacccttgtgacagtctctcttcttattgtgacgttactat...
species | Physcomitrella patens |
transcript | PP1S18_19V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|7583662|gb|AW699569.1|AW699569
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: GCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|15261911|gb|BI437221.1|BI437221
genomic: GCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|162250643|gb|FC428234.1|FC428234
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|67508436|gb|BJ941303.1|BJ941303
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|6166790|gb|AW145054.1|AW145054
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: GCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|162213505|gb|FC389377.1|FC389377
genomic: GCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCCEST: gi|18366809|gb|BJ198888.1|BJ198888
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAEST: gi|162213504|gb|FC389376.1|FC389376
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCA
EST: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAG GGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
genomic: TTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattat ... atgcttgcagGGGCAAAATGAAGATCAAAGGGAGCATGAGCGCAGCTCAGAAGTTCACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTTCATAGCTGTTTCCAGCGGAAAAATGAACCCTCAAATGGCTTTCATCAGgtgtgattatcttaacctcgttttattgtccacccttcttcaacgacagaagtgtttccgacccttgtgacagtctctcttcttattgtgacgttactat
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