1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
CATTCATAAAGGAGCGGGTGTCACGAAGGGAATCACCATGAAGGCCTTACTATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaagaacagacagacccttggtttctatttggtgcttgaggttatgaattcccttattgcatattagaatgcagtacccgcaatcttaccaggcc...
species | Physcomitrella patens |
transcript | PP1S180_53V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|208374343|gb|DC941156.1|DC941156
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|100392407|gb|BY953347.1|BY953347
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|100358061|gb|BY965452.1|BY965452
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|100404244|gb|BY955328.1|BY955328
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|208376225|gb|DC914510.1|DC914510
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAACGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAEST: gi|100398077|gb|BY954076.1|BY954076
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCATAAAGGAGCGGGTGTCACGAAGGGAATCACCATGAAGGCCTTACTATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaagaacagacagacccttggtttctatttggtgcttgaggttatgaattcccttattgcatattagaatgcagtacccgcaatcttaccaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG