1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTAGTTCATCCTTTGAAGGTTTCATTGGAAGATCTTTACAATGGCACTTCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatttggttaattgaatttgcaagattagaattgcgatgtgagaacggtagtttgagatctgcgtgcttaacactaatttaactgtcaaagacg...
species | Physcomitrella patens |
transcript | PP1S174_37V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|162197042|gb|FC375241.1|FC375241
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCEST: gi|162180092|gb|FC356657.1|FC356657
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|100431293|gb|BY960124.1|BY960124
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|162151466|gb|FC326971.1|FC326971
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|162173994|gb|FC350509.1|FC350509
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|162263312|gb|FC439094.1|FC439094
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|100441389|gb|BY962678.1|BY962678
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: GGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|162166513|gb|FC343210.1|FC343210
genomic: GGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|161979173|gb|EE296304.1|EE296304
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: ACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|100384322|gb|BY969453.1|BY969453
genomic: ACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTCEST: gi|100396849|gb|BY953858.1|BY953858
genomic: TCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGAAGACTGGTGCATCTAGTCGGTGCGCAGGATGTCAAGGTTC
EST: CNTA-GAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGG GAAAGGATCGA
genomic: C-TAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatt ... aattgtgcagGAAAGGATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAGTTCATCCTTTGAAGGTTTCATTGGAAGATCTTTACAATGGCACTTCTAAGAAGCTGTCATTGTCTCGGAATGTACTTTGCTCCAAATGTAAAGGgtaagctatttggttaattgaatttgcaagattagaattgcgatgtgagaacggtagtttgagatctgcgtgcttaacactaatttaactgtcaaagacg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG