1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGGGATCTGGAGGTTCTGGAGAGAATTAAGTACAATGACGGACTTGATCACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaacgagtctgctgcccgctaaaatgagttttttgcacattattatggatcaaaactttcatactgaatagctgaattatttattcttgacgg...
species | Physcomitrella patens |
transcript | PP1S166_97V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTACAGANTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAG GCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACACEST: gi|162165341|gb|FC340829.1|FC340829
genomic: ACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaa ... gcgggagcagGCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACAC
EST: ACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAG GCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACACEST: gi|162170567|gb|FC347687.1|FC347687
genomic: ACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaa ... gcgggagcagGCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACAC
EST: ACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAG GCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACACEST: gi|37836042|gb|BJ594050.1|BJ594050
genomic: ACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaa ... gcgggagcagGCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACAC
EST: TTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAG GCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACAC
genomic: TTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaa ... gcgggagcagGCCGATGCTGTGTTTGCATTCCAGCTGCGTAACCCTGTTCACAACGGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGATCTGGAGGTTCTGGAGAGAATTAAGTACAATGACGGACTTGATCACTACAGATTGTCGCCAGCAGAGCTGCGTGCTGAGTTTGAAAGGCGGGAGgtagtttcaacgagtctgctgcccgctaaaatgagttttttgcacattattatggatcaaaactttcatactgaatagctgaattatttattcttgacgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC