Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctttttcacatctctttatcaacaatgcaatgtcttgtcgacaaccttcttgagtagtaattgcaatcataagaaaagcacgtcccattcacc...

Basic information

species Physcomitrella patens
transcript PP1S134_153V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386958|gb|DC941620.1|DC941620
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAANACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67569446|gb|BJ942270.1|BJ942270
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67723486|gb|BJ973745.1|BJ973745
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|19786234|gb|BQ040452.1|BQ040452
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGA
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGA
EST: gi|18361441|gb|BJ193507.1|BJ193507
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|19789984|gb|BQ041627.1|BQ041627
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|37839158|gb|BJ597166.1|BJ597166
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67578955|gb|BJ951106.1|BJ951106
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18340971|gb|BJ173003.1|BJ173003
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGTA
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCG-A
EST: gi|18349653|gb|BJ181703.1|BJ181703
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162258234|gb|FC434633.1|FC434633
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162204466|gb|FC381694.1|FC381694
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67722675|gb|BJ972934.1|BJ972934
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162224345|gb|FC400176.1|FC400176
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|208362372|gb|DC954618.1|DC954618
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162215005|gb|FC391293.1|FC391293
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67723133|gb|BJ973392.1|BJ973392
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67709370|gb|BJ965186.1|BJ965186
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67702999|gb|BJ963232.1|BJ963232
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67721703|gb|BJ971962.1|BJ971962
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|37852333|gb|BJ610341.1|BJ610341
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67720641|gb|BJ970900.1|BJ970900
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18372815|gb|BJ204417.1|BJ204417
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162236228|gb|FC411997.1|FC411997
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67723176|gb|BJ973435.1|BJ973435
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162238784|gb|FC417626.1|FC417626
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18333098|gb|BJ165112.1|BJ165112
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCAAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162217394|gb|FC392862.1|FC392862
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67507675|gb|BJ940555.1|BJ940555
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162236229|gb|FC411998.1|FC411998
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67723445|gb|BJ973704.1|BJ973704
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162204812|gb|FC381169.1|FC381169
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162208718|gb|FC384854.1|FC384854
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18335117|gb|BJ167135.1|BJ167135
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67721506|gb|BJ971765.1|BJ971765
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACCATGGGTTTCAGCTTGTTCGA
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGAC-ATGGGTTTCAGCTTGTTCGA
EST: gi|162227082|gb|FC403388.1|FC403388
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162224344|gb|FC400175.1|FC400175
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67692711|gb|BJ952944.1|BJ952944
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|162238785|gb|FC417627.1|FC417627
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|19781834|gb|BQ039779.1|BQ039779
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67721915|gb|BJ972174.1|BJ972174
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18331621|gb|BJ163632.1|BJ163632
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|37828615|gb|BJ586627.1|BJ586627
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|67704637|gb|BJ964870.1|BJ964870
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
EST: gi|18325140|gb|BJ157136.1|BJ157136
EST:     CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG                         GAGGAGCAAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT
genomic: CCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 73

GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctt ... tgttttgcagGAGGAGCCAAAGGAAGAAAGCGATGAAGACATGGGTTTCAGCTTGTTCGATTAGAATTATCTTGTAGGTATAGAGGAATGCTATCTATGCCGATCTTGCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAGgtagtttctttttcacatctctttatcaacaatgcaatgtcttgtcgacaaccttcttgagtagtaattgcaatcataagaaaagcacgtcccattcacc

- - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa