1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGTGGAAACTTGTAAAGTTTGGGTTTCCCAAACTTTGGGACTACGTCTGGCGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgttctacactctcataccaatgtgtattactgcaaccacaattagcattgtgtaatatggatcataagctgattcatgtgttacatgctaaaggttgtataatccgcactttgcgtacacttgtcctgtacag
species | Physcomitrella patens |
transcript | PP1S9_317V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|18348656|gb|BJ180705.1|BJ180705
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|208396371|gb|DC911946.1|DC911946
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|18361383|gb|BJ193449.1|BJ193449
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|100356505|gb|BY946399.1|BY946399
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|18363933|gb|BJ196005.1|BJ196005
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|100418237|gb|BY993400.1|BY993400
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTGEST: gi|18327914|gb|BJ159918.1|BJ159918
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
EST: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAG ATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
genomic: CGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgt ... tcctgtacagATCCAGGAGATAAGCAGAAGTCAAATATCATACCCCCTGAGATTCTCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGAAACTTGTAAAGTTTGGGTTTCCCAAACTTTGGGACTACGTCTGGCGTGAGAACAATGGCGGTTGAGGATCACCTCACAAAGGGATACACGAAAGgtataaacgttctacactctcataccaatgtgtattactgcaaccacaattagcattgtgtaatatggatcataagctgattcatgtgttacatgctaaaggttgtataatccgcactttgcgtacacttgtcctgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT