1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTGGAGCTATGGCGAAAAGCTATGGAGTTTATACTGACAAAATTGGCGTCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatgcactgttttacccccgctagagtgttttaaaataagaaaaaaataagaataaaaaaataaaatctaatttcttgaatcccactgaattct...
species | Physcomitrella patens |
transcript | PP1S9_26V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAG AGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTTEST: gi|18345371|gb|BJ177414.1|BJ177414
genomic: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatg ... atgtgtgcagAGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTT
EST: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAG AAGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTEST: gi|208389727|gb|DC938303.1|DC938303
genomic: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatg ... atgtgtgcagA-GCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTT
EST: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAG AGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTTEST: gi|18331631|gb|BJ163642.1|BJ163642
genomic: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatg ... atgtgtgcagAGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTT
EST: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAG AGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTTEST: gi|162150702|gb|FC327598.1|FC327598
genomic: TCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatg ... atgtgtgcagAGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTT
EST: AACTTACAACATACCCAAGGAAATCGTTAG AGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTT
genomic: AACTTACAACATACCCAAGGAAATCGTTAGgtatggaatg ... atgtgtgcagAGCTCAGCTGTCCATCTCTCTTGGACTTGAATAGCTATCTTTTGAGTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGAGCTATGGCGAAAAGCTATGGAGTTTATACTGACAAAATTGGCGTCAGTTTCTATGTATGAGACAACTTACAACATACCCAAGGAAATCGTTAGgtatggaatgcactgttttacccccgctagagtgttttaaaataagaaaaaaataagaataaaaaaataaaatctaatttcttgaatcccactgaattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa