1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGGCCTCAGTCCATACGTCTCTATCCTCGTCCAACATTGGATTTCGCCTCCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctcacaaacccgtgtcttgtttgttctcgtttgttgctcttcttggttcgcaactataatctttgttaccttcgcatttcgcttgagatttattgaagattaaagcaatgaagtaaaccttgtttttctttcttgtgtgtag
species | Physcomitrella patens |
transcript | PP1S9_212V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|18365765|gb|BJ197842.1|BJ197842
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|37838432|gb|BJ596440.1|BJ596440
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CNTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|67697114|gb|BJ957347.1|BJ957347
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|18360457|gb|BJ192519.1|BJ192519
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|67573726|gb|BJ946550.1|BJ946550
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|37846217|gb|BJ604225.1|BJ604225
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGGEST: gi|18330997|gb|BJ163003.1|BJ163003
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
EST: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAG GTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
genomic: CCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctca ... ttgtgtgtagGTATTGTTGAACCAATCAAAGCTGGTGTTCGAGACGCAAAGCTTGGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCCTCAGTCCATACGTCTCTATCCTCGTCCAACATTGGATTTCGCCTCCTCCAGAAGATGGGGTGGAGAGGGAAAGGGCTTGGTAAAAACGAACAAGgtgtgtctcacaaacccgtgtcttgtttgttctcgtttgttgctcttcttggttcgcaactataatctttgttaccttcgcatttcgcttgagatttattgaagattaaagcaatgaagtaaaccttgtttttctttcttgtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG