1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGTAGGACGTGTTTGTAGATAGTCATGGATCCTTCCAGACGGCAGGGTGGTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagctcgtatttcgaaatgatatctatcatgtggatctgattttcacatgataacgacggatctgaatgcgtgtctatgacattgagctccatgg...
species | Physcomitrella patens |
transcript | PP1S9_212V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAG GCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCTEST: gi|18365765|gb|BJ197842.1|BJ197842
genomic: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagct ... ttgattgcagGCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
EST: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAG GCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCTEST: gi|18367233|gb|BJ199314.1|BJ199314
genomic: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagct ... ttgattgcagGCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
EST: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAG GCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCTEST: gi|67573726|gb|BJ946550.1|BJ946550
genomic: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagct ... ttgattgcagGCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
EST: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAG GCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCTEST: gi|100389063|gb|BY952267.1|BY952267
genomic: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagct ... ttgattgcagGCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
EST: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAG GCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
genomic: GTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagct ... ttgattgcagGCGTATGAAGATTCGTTGGCTGATGATCTGGGTGAAGAATTTAGGCTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTAGGACGTGTTTGTAGATAGTCATGGATCCTTCCAGACGGCAGGGTGGTGGTTATGCAGTGTTCGCGCAAGAGCAACGGCAGAGAGAGCGTGAACAGgtaaaaagctcgtatttcgaaatgatatctatcatgtggatctgattttcacatgataacgacggatctgaatgcgtgtctatgacattgagctccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA