1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAAATCACCTAATTACCCTCCACGAAGTCCTCCTGGTTCCTTAAATTCTGACTTGGAAGAAGAGAACGTGCTTCCATTATTGAGAGGGGCCTCGCGAAGgttagtatggtgactctctaggctacttgcttcagctaagcagttgtcatattcatcgctttcaattattcttttgaacaccttgctctcaaatttaaca...
species | Physcomitrella patens |
transcript | PP1S9_210V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACTTGGAAGAAGAGAACGTGCATCCATTATTGAGAGGGGCCTCGCGAAG GGATCCGAACATGGAAGCGGACGGTGGTTACATTTCATCACTTGATGACTAEST: gi|100395228|gb|BY953644.1|BY953644
genomic: GACTTGGAAGAAGAGAACGTGCTTCCATTATTGAGAGGGGCCTCGCGAAGgttagtatgg ... tgatcttcagGGATCCGAACATGGAAGCGGACGGTGGTTACATTTCATCACTTGATGACTA
EST: GACTTGGAAGAAGAGAACGTGCTTCCATTATTGAGAGGGGCCTCGCGAAG GGATCCGAACATGGAAGCGGACGGTGGTTACATTTCATCACTTGATGACTA
genomic: GACTTGGAAGAAGAGAACGTGCTTCCATTATTGAGAGGGGCCTCGCGAAGgttagtatgg ... tgatcttcagGGATCCGAACATGGAAGCGGACGGTGGTTACATTTCATCACTTGATGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAATCACCTAATTACCCTCCACGAAGTCCTCCTGGTTCCTTAAATTCTGACTTGGAAGAAGAGAACGTGCTTCCATTATTGAGAGGGGCCTCGCGAAGgttagtatggtgactctctaggctacttgcttcagctaagcagttgtcatattcatcgctttcaattattcttttgaacaccttgctctcaaatttaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG