1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTAGGAGTTCAAGCGTCTTTGCTTGGGGTAGGCGCCCCGGAAGCTTTGGTGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagcaacctacgatctctctttctcacccttcctccctccctcctcttcaatcgtaacggtatgagcactgtagcttgaatgtggaagcgcaaa...
species | Physcomitrella patens |
transcript | PP1S93_67V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208384568|gb|DC907069.1|DC907069
genomic: TCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208398893|gb|DC920841.1|DC920841
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208375976|gb|DC906967.1|DC906967
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208387152|gb|DC945451.1|DC945451
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208366273|gb|DC947531.1|DC947531
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|100426838|gb|BY977388.1|BY977388
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|18357094|gb|BJ189153.1|BJ189153
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|208373033|gb|DC948798.1|DC948798
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGEST: gi|22491833|gb|BU051756.1|BU051756
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
EST: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAG GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
genomic: TGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagc ... tgtgttgcagGTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGGAGTTCAAGCGTCTTTGCTTGGGGTAGGCGCCCCGGAAGCTTTGGTGATAGGCGTGGTGGCACTGCTCGTGTTCGGTCCGAAAGGTCTTGCCGAGgtattggagcaacctacgatctctctttctcacccttcctccctccctcctcttcaatcgtaacggtatgagcactgtagcttgaatgtggaagcgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG