1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTAGAAACTGAAAGTCCATCGGCAACGACAGCAGCAAGTTCTTTAGTCAACTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattccgttcttcttattccttgtaggtggtatgtcggatttctttgctatgaactctgcagattttcgagttaaaaatctgcgaattcagaaaa...
species | Physcomitrella patens |
transcript | PP1S93_184V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTTCCTG CTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGATACAAATGCAGACGEST: gi|100396738|gb|BY953802.1|BY953802
genomic: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattc ... atttgtgcagCTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGATACAAATGCAGACG
EST: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTG CTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGATACEST: gi|100414275|gb|BY992697.1|BY992697
genomic: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattc ... atttgtgcagCTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGATAC
EST: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTG CTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGEST: gi|100411897|gb|BY992394.1|BY992394
genomic: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattc ... atttgtgcagCTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAG
EST: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTG CTACTCAGGAATCAGTGGACCATTTTCAGCANGCAGATACAAATGCAGACG
genomic: CTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattc ... atttgtgcagCTACTCAGGAATCAGTGGACCATTTTCAGCAGGCAGATACAAATGCAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGAAACTGAAAGTCCATCGGCAACGACAGCAGCAAGTTCTTTAGTCAACTCCATGACCCCGACAGCTCGTTCTGTCCTTATTTCCGCTCTCTTCCCTGgtaagcattccgttcttcttattccttgtaggtggtatgtcggatttctttgctatgaactctgcagattttcgagttaaaaatctgcgaattcagaaaa
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