1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGACCAAGAAGTCCTTCTGCCCGGGGAAGGCATGTAAGAAGCATACCCTTCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggcagtgacgatttttttgtctacgtgacctaatcactgggctacacgcatgagactggcgaagtctcatgcagggcgtttggggtttggtgg...
species | Physcomitrella patens |
transcript | PP1S74_73V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162240633|gb|FC419371.1|FC419371
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|6166933|gb|AW145197.1|AW145197
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|19778932|gb|BQ039383.1|BQ039383
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|7583124|gb|AW699288.1|AW699288
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCANTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162253144|gb|FC428976.1|FC428976
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162226401|gb|FC403317.1|FC403317
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|7286483|gb|AW598970.1|AW598970
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162247250|gb|FC421397.1|FC421397
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|7648293|gb|AW739276.1|AW739276
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|37837319|gb|BJ595327.1|BJ595327
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|7286770|gb|AW599257.1|AW599257
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162238602|gb|FC418978.1|FC418978
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162237489|gb|FC412987.1|FC412987
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|37853211|gb|BJ611219.1|BJ611219
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGNTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162207222|gb|FC382544.1|FC382544
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162237488|gb|FC412986.1|FC412986
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162227433|gb|FC403167.1|FC403167
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162251686|gb|FC426092.1|FC426092
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162215763|gb|FC390828.1|FC390828
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|15262193|gb|BI437503.1|BI437503
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162238601|gb|FC418977.1|FC418977
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCCCAAGGTGACGCAGTCCAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162242300|gb|FC418877.1|FC418877
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|19790859|gb|BQ042093.1|BQ042093
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|18325570|gb|BJ157567.1|BJ157567
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162253143|gb|FC428975.1|FC428975
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162243013|gb|FC417861.1|FC417861
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|67575708|gb|BJ948532.1|BJ948532
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162201010|gb|FC378141.1|FC378141
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162234136|gb|FC410350.1|FC410350
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162217327|gb|FC392795.1|FC392795
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|15327129|gb|BI487613.1|BI487613
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162204495|gb|FC380800.1|FC380800
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162218149|gb|FC394986.1|FC394986
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|18357955|gb|BJ190014.1|BJ190014
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|67699190|gb|BJ959423.1|BJ959423
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162233666|gb|FC409425.1|FC409425
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|162215762|gb|FC390827.1|FC390827
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCEST: gi|18359810|gb|BJ191871.1|BJ191871
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACCAAGAAGTCCTTCTGCCCGGGGAAGGCATGTAAGAAGCATACCCTTCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggcagtgacgatttttttgtctacgtgacctaatcactgggctacacgcatgagactggcgaagtctcatgcagggcgtttggggtttggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG