1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatagttttttcggatcttcctgaattggttgttagctttcccttattacggaagtgtaatttttttgtctggaacatctcaaaccctatgaatt...
species | Physcomitrella patens |
transcript | PP1S58_38V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162229091|gb|FC404775.1|FC404775
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162212016|gb|FC388126.1|FC388126
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|67569177|gb|BJ942001.1|BJ942001
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162230248|gb|FC406604.1|FC406604
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|37832289|gb|BJ590301.1|BJ590301
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACNTGGTTCAACCAGCCCGCCCACAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCNTACTGCTGGACCACEST: gi|19788486|gb|BQ040777.1|BQ040777
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGTTGTACCACEST: gi|162214883|gb|FC391018.1|FC391018
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162184451|gb|FC359197.1|FC359197
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|18366625|gb|BJ198704.1|BJ198704
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|18374966|gb|BJ206544.1|BJ206544
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|208346451|gb|DC917404.1|DC917404
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|208349479|gb|DC905617.1|DC905617
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162214882|gb|FC391017.1|FC391017
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162209537|gb|FC385633.1|FC385633
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|18327512|gb|BJ159515.1|BJ159515
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|67692422|gb|BJ952655.1|BJ952655
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162271775|gb|FC448908.1|FC448908
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162201749|gb|FC377501.1|FC377501
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: CCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162212397|gb|FC388125.1|FC388125
genomic: CCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162217291|gb|FC392031.1|FC392031
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162271774|gb|FC448907.1|FC448907
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|37844654|gb|BJ602662.1|BJ602662
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCNTACTGCTGGACCACEST: gi|208381498|gb|DC919500.1|DC919500
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162201750|gb|FC377502.1|FC377502
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: CCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162222665|gb|FC397477.1|FC397477
genomic: CCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|18355339|gb|BJ187398.1|BJ187398
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCACAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162278222|gb|FC454457.1|FC454457
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162222664|gb|FC397476.1|FC397476
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|208384998|gb|DC903505.1|DC903505
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162229991|gb|FC407353.1|FC407353
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|18374111|gb|BJ205689.1|BJ205689
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|22492659|gb|BU052582.1|BU052582
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|67703647|gb|BJ963880.1|BJ963880
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAANAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162229992|gb|FC407354.1|FC407354
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCACEST: gi|162230249|gb|FC406605.1|FC406605
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatag ... ggttttgcagCACGTCAAAAGAAGGCTGTCGCTGTGTTTCCACGCCCTACTGCTGGACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatagttttttcggatcttcctgaattggttgttagctttcccttattacggaagtgtaatttttttgtctggaacatctcaaaccctatgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC