1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGAAGTTTTCAGCTGAGGAGCTCCGTGCTATTATGGACAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatcagaaactattacttagtggatttcctatgattactattctgacacaattgacttcatcgaattgaatttcgaaagttactctgtgttcaag...
species | Physcomitrella patens |
transcript | PP1S431_2V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|67703285|gb|BJ963518.1|BJ963518
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100394266|gb|BY972010.1|BY972010
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100402757|gb|BY973341.1|BY973341
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100387850|gb|BY970595.1|BY970595
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100440627|gb|BY962314.1|BY962314
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100391100|gb|BY953110.1|BY953110
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100385060|gb|BY987523.1|BY987523
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18374280|gb|BJ205858.1|BJ205858
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18343269|gb|BJ175307.1|BJ175307
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGNAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100403457|gb|BY991209.1|BY991209
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|67571224|gb|BJ944048.1|BJ944048
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100394044|gb|BY971930.1|BY971930
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|67702942|gb|BJ963175.1|BJ963175
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100361752|gb|BY947805.1|BY947805
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100386849|gb|BY988118.1|BY988118
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
genomic: CAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatca ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAGTTTTCAGCTGAGGAGCTCCGTGCTATTATGGACAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatcagaaactattacttagtggatttcctatgattactattctgacacaattgacttcatcgaattgaatttcgaaagttactctgtgttcaag
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGC