1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTTCAAGCGTGAAAAACAGCTCCTCAGCTAGTTCTGCATTTCCGTCTGGTCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttcatatttttatgatcgaagacgggggattcgtattctctaagtttttcgaggacactgttacgtagttgtttcaactatcacatgttcgctg...
species | Physcomitrella patens |
transcript | PP1S42_16V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|162231292|gb|FC406533.1|FC406533
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100426955|gb|BY977448.1|BY977448
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|18328243|gb|BJ160247.1|BJ160247
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|208363997|gb|DC939590.1|DC939590
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|208376982|gb|DC911050.1|DC911050
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100423213|gb|BY958195.1|BY958195
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCNTC-ACGCGCTGCAEST: gi|100365178|gb|BY966849.1|BY966849
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCC-TCCACGCGCTGCA
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100411477|gb|BY974655.1|BY974655
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100406431|gb|BY955623.1|BY955623
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100444442|gb|BY964140.1|BY964140
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|7207567|gb|AW561615.1|AW561615
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100448633|gb|CJ972932.1|CJ972932
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|18367244|gb|BJ199325.1|BJ199325
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100387757|gb|BY951757.1|BY951757
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|18353836|gb|BJ185891.1|BJ185891
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|18356924|gb|BJ188983.1|BJ188983
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCACEST: gi|100403625|gb|BY955020.1|BY955020
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
EST: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAG CTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
genomic: TCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttca ... atgatcgtagCTCGCAGCGCGGCTGAGAACATCCCGCCACGACCTCCTCCACGCGCTGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCAAGCGTGAAAAACAGCTCCTCAGCTAGTTCTGCATTTCCGTCTGGTCCAAATATATCGGTTCATCAACGTCCAGCTGCTGCAGGGGCAAGCACAGgtgcgcttcatatttttatgatcgaagacgggggattcgtattctctaagtttttcgaggacactgttacgtagttgtttcaactatcacatgttcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG