1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACACCCATTGTGTCTGAGGAGGGGTTGGAAGCTCTTCACCCCATTGATCTCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtcccgttgtctactgatttttctacattgagggccatatttaatttctttctattttcgccagaataggtgaagggtttatttttcaaagaaaagagaatttactcctttctcatcttgctctcattcctcccttcatag
species | Physcomitrella patens |
transcript | PP1S3_96V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162215136|gb|FC390761.1|FC390761
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162265473|gb|FC440799.1|FC440799
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: AGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162239163|gb|FC416263.1|FC416263
genomic: AGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|7067513|gb|AW497368.1|AW497368
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|18345057|gb|BJ177098.1|BJ177098
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162196438|gb|FC375430.1|FC375430
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162197017|gb|FC375229.1|FC375229
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162155745|gb|FC331774.1|FC331774
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|100416688|gb|BY993038.1|BY993038
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162269780|gb|FC444933.1|FC444933
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162193872|gb|FC368734.1|FC368734
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTGEST: gi|162265474|gb|FC440800.1|FC440800
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
EST: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAG GTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
genomic: TCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtccc ... cccttcatagGTGGGCGATGGAGCAGCAGTGTTAGGGTTTGTAGGCTCACCATGGACCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACCCATTGTGTCTGAGGAGGGGTTGGAAGCTCTTCACCCCATTGATCTCGACAAGGTCAACTTTGTAGGGGAGTCCCTCAGCATCTTGCGGGAAGAGgtatagtcccgttgtctactgatttttctacattgagggccatatttaatttctttctattttcgccagaataggtgaagggtttatttttcaaagaaaagagaatttactcctttctcatcttgctctcattcctcccttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA