1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGTCGACAGCTGAGGCATTTAAAAATGCCGCTTGCGGACTTCTTTTATCTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagtttatttatttttaatttatactcatttatttaaaattttaacttatttaattaatttttaactttaaaatttttatgagtgcttctgtta...
species | Physcomitrella patens |
transcript | PP1S319_46V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|208371438|gb|DC955774.1|DC955774
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|7067149|gb|AW497004.1|AW497004
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGATCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|162226254|gb|FC402962.1|FC402962
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|7207426|gb|AW561428.1|AW561428
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|6227357|gb|AW155964.1|AW155964
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: TCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|162248517|gb|FC425293.1|FC425293
genomic: TCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|162260313|gb|FC435616.1|FC435616
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|7147910|gb|AW509832.1|AW509832
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|162246699|gb|FC425292.1|FC425292
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|162226255|gb|FC402963.1|FC402963
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTCEST: gi|208353885|gb|DC942783.1|DC942783
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
EST: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAG ATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
genomic: CTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagt ... ttccgtgcagATGAGATTGCCACCACTGTCCACTGACCCGAATCGATGTGAAAGAGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTCGACAGCTGAGGCATTTAAAAATGCCGCTTGCGGACTTCTTTTATCTTTCTCCTTAGCAACTGCATCACCATCGTTCGCTGCTCAAAATAGCCAGgtgcctaagtttatttatttttaatttatactcatttatttaaaattttaacttatttaattaatttttaactttaaaatttttatgagtgcttctgtta
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