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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGTGCAAGCACCCATGGGACCTGATATCTCCGGCCCGGAGCTTGTGGCCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgcttccgtctcatactgggtgtgtaagtaccaatagtttatgtgcattttgtatttagttccatgtgtgtagatattttgcctgattgttttcgattctggtggctcaagtttcgattatcgttggaaatgaaggattgataattctcggttgcttgcag

Basic information

species Physcomitrella patens
transcript PP1S226_16V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S226_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT5G64250.2 (Arabidopsis thaliana), 5'ss of exon 1
AATTGTGCAAGCACCCATGGGACCTGATATCTCCGGCCCGGAGCTTGTGGCCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgcttccgtctcatactgggtgtgtaagtaccaatagtttatgtgcattttgtatttagttccatgtgtgtagatattttgcctgattgttttcgattctggtggctcaagtttcgattatcgttggaaatgaaggattgataattctcggttgcttgcag
 || || || || ||  | ||||| ||||||||||| || |||||||| |||||||| || |||||||||||  | ||  ||||| |   |||   |  |||    |||  |  | || |  |   ||  |   |    |||| |    || ||| |||   |   |  ||  |                                                                                             
GATAGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgcaactttttcgttttctttg-atttttgtttatagatatattgaattatgtgaatcaatgaatcag---------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359680|gb|BJ191741.1|BJ191741
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162200083|gb|FC376545.1|FC376545
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162259323|gb|FC435694.1|FC435694
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100384388|gb|BY969519.1|BY969519
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162219223|gb|FC396662.1|FC396662
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100386410|gb|BY951206.1|BY951206
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162230113|gb|FC406261.1|FC406261
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162229753|gb|FC405168.1|FC405168
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162180059|gb|FC356624.1|FC356624
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162273667|gb|FC449182.1|FC449182
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100376828|gb|BY949484.1|BY949484
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100449309|gb|CJ973608.1|CJ973608
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|208389279|gb|DC933307.1|DC933307
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|162185978|gb|FC361806.1|FC361806
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100407855|gb|BY955812.1|BY955812
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|67719306|gb|BJ969565.1|BJ969565
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100413874|gb|BY975016.1|BY975016
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100448728|gb|CJ973027.1|CJ973027
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|100373871|gb|BY967834.1|BY967834
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
EST: gi|208363878|gb|DC943335.1|DC943335
EST:     CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAG                         GACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC
genomic: CCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGgtctcatgct ... ttgcttgcagGACTATCCAGGAGTGCTGAAGGAGATGGTGGCCCGCACGCGACAGCTGACC