Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcag

Basic information

species Physcomitrella patens
transcript PP1S169_19V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 2
ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaat-tggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccat--ttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcag
||  ||||| |  | | ||| || ||||||||||||||||| |||||||||||    || || ||||| ||||| |     ||   ||||||||||  || | | |  |     ||  ||| ||  |||   || ||    |||  | |  ||| |  |  ||   |  ||| |||       |||      |      || | | |    || || ||                                          
ACCTTCAAGCGCAGGAACGGCGGCCGCAACAAGCATGGCCGCGGCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgttcgcg-gattcagattctcttgcagattt--gttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcg-gcttggctgattcgttggttcttgggtcgtcgccttgtcgcag-----------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g39960.2 (Oryza sativa), 5'ss of exon 2
ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaat-tggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccatt--tttatcacattaggatttagaatcgctgatcattggtgttgaattttgcag
||  ||||| |  | | ||| || ||||||||||||||||| |||||||||||    || || ||||| ||||| |     ||   ||||||||||  || | | |  |     ||  ||| ||  |||   || ||    |||  | |  ||| |  |  ||   |  ||| |||       |||      |      || | | |    || || ||  |  |                                    
ACCTTCAAGCGCAGGAACGGCGGCCGCAACAAGCATGGCCGCGGCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgttcgcg-gattcagattctcttgcagattt--gttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcg-gcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaag-----------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ33618 (Selaginella moellendorffii), 5'ss of exon 1
---ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgt-tgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcag
   ||||||||| |||| |  || || ||||||||||| ||||| ||||||||  | || || |||||||| || ||||||||||| ||||||||||| || | |    ||| |    | || |    | |  |   | |  | |||      |                                                                                                            
ATGACTGTCAAGCGGCGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCATGTCGATCCAATCCGGTGCTCCAATTGTGGGCGCTGCGTCCCCAAGgtatgacat----ctagatctctctttg---ccggcggagctgagatttcgcctccag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ36971 (Selaginella moellendorffii), 5'ss of exon 1
---ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgt-tgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcag
   ||||||||| |||| |  || || ||||||||||| ||||| ||||||||  | || || |||||||| || ||||||||||| ||||||||||| || | |    ||| |   ||||    ||  | ||||      | |  |  |||       |||                                                                                                    
ATGACTGTCAAGCGGCGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCATGTCGATCCAATCCGGTGCTCCAATTGTGGGCGCTGCGTCCCCAAGgtatgacat----ctagaggattttccatctctctttgccg-gcggagctgagatttcgcctccag----------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228482|gb|FC404431.1|FC404431
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67723878|gb|BJ974137.1|BJ974137
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTATTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|208387340|gb|DC933091.1|DC933091
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGACCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162239540|gb|FC417979.1|FC417979
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18331275|gb|BJ163284.1|BJ163284
EST:     TGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: TGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162201620|gb|FC378282.1|FC378282
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162201619|gb|FC378281.1|FC378281
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67571052|gb|BJ943876.1|BJ943876
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162268529|gb|FC444402.1|FC444402
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162241701|gb|FC417228.1|FC417228
EST:     GCCATGTGAACCCTTTTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67716842|gb|BJ967101.1|BJ967101
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18374914|gb|BJ206492.1|BJ206492
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGNAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTG-AAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
EST: gi|18341200|gb|BJ173233.1|BJ173233
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162242312|gb|FC416094.1|FC416094
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGG-TTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
EST: gi|37822905|gb|BJ580971.1|BJ580971
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67703717|gb|BJ963950.1|BJ963950
EST:     CCATGGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: CCAT-GTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|208377368|gb|DC906637.1|DC906637
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|208364047|gb|DC947235.1|DC947235
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGACCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|37833508|gb|BJ591520.1|BJ591520
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162243575|gb|FC419512.1|FC419512
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162268530|gb|FC444403.1|FC444403
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67725360|gb|BJ975619.1|BJ975619
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18356574|gb|BJ188633.1|BJ188633
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162221374|gb|FC398535.1|FC398535
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18359686|gb|BJ191747.1|BJ191747
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTG-AAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
EST: gi|18343709|gb|BJ175747.1|BJ175747
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67709802|gb|BJ965618.1|BJ965618
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTATTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18349005|gb|BJ181054.1|BJ181054
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCC-GTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGC
EST: gi|67709312|gb|BJ965128.1|BJ965128
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67578123|gb|BJ950290.1|BJ950290
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|67694360|gb|BJ954593.1|BJ954593
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|19781336|gb|BQ039687.1|BQ039687
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162277116|gb|FC453338.1|FC453338
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|208395101|gb|DC920514.1|DC920514
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162220442|gb|FC395979.1|FC395979
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|37835973|gb|BJ593985.1|BJ593985
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|18342387|gb|BJ174422.1|BJ174422
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162261378|gb|FC437811.1|FC437811
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162204729|gb|FC381125.1|FC381125
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162271874|gb|FC448084.1|FC448084
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
EST: gi|162243574|gb|FC419511.1|FC419511
EST:     GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG                         GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 99

ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAGgttgccgtgc ... aattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG




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