1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcccaccgctgtattggtgaatttggttacaaactgtccgttatttgagactctatgatatgtgtgacagcggtaaccctaggacctttggtg...
species | Physcomitrella patens |
transcript | PP1S126_52V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162218145|gb|FC394982.1|FC394982
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162222749|gb|FC399003.1|FC399003
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67699691|gb|BJ959924.1|BJ959924
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67576194|gb|BJ949018.1|BJ949018
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67576216|gb|BJ949040.1|BJ949040
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67699716|gb|BJ959949.1|BJ959949
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162252357|gb|FC426165.1|FC426165
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162274823|gb|FC450850.1|FC450850
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67574166|gb|BJ946990.1|BJ946990
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162270108|gb|FC446184.1|FC446184
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67698454|gb|BJ958687.1|BJ958687
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67696535|gb|BJ956768.1|BJ956768
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|18351988|gb|BJ184040.1|BJ184040
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67697564|gb|BJ957797.1|BJ957797
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162243609|gb|FC421808.1|FC421808
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGGTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162252356|gb|FC426164.1|FC426164
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67573151|gb|BJ945975.1|BJ945975
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162274992|gb|FC450851.1|FC450851
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67576924|gb|BJ949748.1|BJ949748
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67572987|gb|BJ945811.1|BJ945811
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67696367|gb|BJ956600.1|BJ956600
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|67575015|gb|BJ947839.1|BJ947839
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCACEST: gi|162218146|gb|FC394983.1|FC394983
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
EST: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGG CGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
genomic: TGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcc ... ggttttgcagCGCGTCAAAAGAAGGCCGTGGCTGTGTTCCCACGCCCTACTGCTGGACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcccaccgctgtattggtgaatttggttacaaactgtccgttatttgagactctatgatatgtgtgacagcggtaaccctaggacctttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC