Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACGAAGAAGTCCTTCTGTCCGGGGAAGGCATGCAAGAAGCACACCCTTCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactgacagttactcagctcatacaggacctagccaaggaaatgtgtttgtcttggtgtctcccttacaaaatgaaccttgtaagagtttttgaa...

Basic information

species Physcomitrella patens
transcript PP1S115_63V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ07113 (Selaginella moellendorffii), 5'ss of exon 2
AAGACGAAGAAGTCCTTCTGTCCGGGGAAGGCATGCAAGAAGCACACCCTTCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactgacagttactcagctcatacaggacctagccaaggaaatgtgtttgtcttggtgtctcccttacaaaatgaaccttgtaagagtttttgaa
|||||||||||||||||||| |  ||||||   |||  ||||||||| || |||||||| || |||||||||||||| ||||||||| | ||||||||||||| |  | |  || |     ||  |    |  |  |     ||  | ||                                                  
AAGACGAAGAAGTCCTTCTGCCAAGGGAAGAATTGCCGGAAGCACACGCTCCACAAGGTCACGCAGTACAAGAAGGGCAAGGACAGCCTCTACGTCCAAGgtaagagccggaagatttctcgcg-agcttgctctgaattgcggtgaggttcacag--------------------------------------------

upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ05955 (Selaginella moellendorffii), 5'ss of exon 2
AAGACGAAGAAGTCCTTCTGTCCGGGGAAGGCATGCAAGAAGCACACCCTTCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactgacagttactcagctcatacaggacctagccaaggaaatgtgtttgtcttggtgtctcccttacaaaatgaaccttgtaagagtttttgaa
|||||||||||||||||||| |  ||||||   |||  ||||||||| || |||||||| || |||||||||||||| ||||||||| | ||||||||||||| |  | |  || |     ||       |  |  |     ||  | ||                                                  
AAGACGAAGAAGTCCTTCTGCCAAGGGAAGAATTGCCGGAAGCACACGCTCCACAAGGTCACGCAGTACAAGAAGGGCAAGGACAGCCTCTACGTCCAAGgtaagagccggaagatttctcgcgagcgt-gctctgaattgcggtgaggttcacag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241724|gb|FC417251.1|FC417251
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162249414|gb|FC424032.1|FC424032
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|7583820|gb|AW699723.1|AW699723
EST:     GTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: GTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162229077|gb|FC404254.1|FC404254
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162270318|gb|FC447018.1|FC447018
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162222248|gb|FC397684.1|FC397684
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162241723|gb|FC417250.1|FC417250
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162247484|gb|FC425050.1|FC425050
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|15261810|gb|BI437120.1|BI437120
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162227849|gb|FC403657.1|FC403657
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|7046977|gb|AW476871.1|AW476871
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|6167413|gb|AW145677.1|AW145677
EST:     TACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162200253|gb|FC376606.1|FC376606
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162239110|gb|FC416236.1|FC416236
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|7286498|gb|AW598985.1|AW598985
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACACGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|18339123|gb|BJ171149.1|BJ171149
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162227850|gb|FC403658.1|FC403658
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|18331764|gb|BJ163775.1|BJ163775
EST:     TCACANGGTGACTCANTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|15327541|gb|BI488295.1|BI488295
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|19788458|gb|BQ040770.1|BQ040770
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|15727710|gb|BI740425.1|BI740425
EST:     TTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162267270|gb|FC442058.1|FC442058
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162243996|gb|FC424314.1|FC424314
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|19777295|gb|BQ039166.1|BQ039166
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|7148012|gb|AW509934.1|AW509934
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|19788138|gb|BQ040727.1|BQ040727
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|19789993|gb|BQ041632.1|BQ041632
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162202455|gb|FC380022.1|FC380022
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162222247|gb|FC397683.1|FC397683
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|15261531|gb|BI436841.1|BI436841
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|7148002|gb|AW509924.1|AW509924
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162232436|gb|FC408337.1|FC408337
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162202454|gb|FC380021.1|FC380021
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|15261398|gb|BI436708.1|BI436708
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162215486|gb|FC390551.1|FC390551
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162239796|gb|FC417195.1|FC417195
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162237952|gb|FC412540.1|FC412540
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|67697893|gb|BJ958126.1|BJ958126
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162231290|gb|FC406531.1|FC406531
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|6227364|gb|AW155955.1|AW155955
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162270317|gb|FC447017.1|FC447017
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|162264250|gb|FC441352.1|FC441352
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
EST: gi|67574475|gb|BJ947299.1|BJ947299
EST:     TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAG                         GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 259

AAGACGAAGAAGTCCTTCTGTCCGGGGAAGGCATGCAAGAAGCACACCCTTCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactg ... attctgccagGAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGCCCGTCTTTCATAAAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGACGAAGAAGTCCTTCTGTCCGGGGAAGGCATGCAAGAAGCACACCCTTCACAAGGTGACTCAGTACAAGAAGGGGAAGGACAGCTTGTACGTCCAAGgtatgtactgacagttactcagctcatacaggacctagccaaggaaatgtgtttgtcttggtgtctcccttacaaaatgaaccttgtaagagtttttgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatgaa