1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGCGTGCTACTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggaggaggttccaaaccttaactttgaagcattaagctttatatcctctctcctctttggtaatatatgcagtttgcgaatttgtaggcgtaatgctttcatgttttgtag
species | Physcomitrella patens |
transcript | PP1S113_31V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGGEST: gi|208370860|gb|DC936898.1|DC936898
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGAEST: gi|67717411|gb|BJ967670.1|BJ967670
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGAEST: gi|162235503|gb|FC411833.1|FC411833
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGAEST: gi|208378113|gb|DC902586.1|DC902586
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGAEST: gi|18374186|gb|BJ205764.1|BJ205764
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAAATG GAACGTCGTTCGCCATTCAATATGGCACTGGGEST: gi|100415055|gb|BY975143.1|BY975143
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGG
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGGTTCTTGAEST: gi|162151133|gb|FC327652.1|FC327652
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
EST: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATG GAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
genomic: CTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggagga ... tgttttgtagGAACGTCGTTCGCCATTCAATATGGCACTGGGTCCATGGAAGGTTTCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCGTGCTACTTCCATCGAAGATACAAATCAAGCAAGTCGAGCACCTACAAGGAAGATGgtatggaggaggttccaaaccttaactttgaagcattaagctttatatcctctctcctctttggtaatatatgcagtttgcgaatttgtaggcgtaatgctttcatgttttgtag
- - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG