Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttcttgcttgccagtagtttgtagggttctctcaatcgtgggttaggcattttgtccaggcttgtctactagacgtcctaatcgcatggattt...

Basic information

species Physcomitrella patens
transcript PP1S102_67V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206021|gb|FC382806.1|FC382806
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162204276|gb|FC379749.1|FC379749
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162253832|gb|FC430557.1|FC430557
EST:     AAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: AAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162245542|gb|FC423277.1|FC423277
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162215713|gb|FC391727.1|FC391727
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162230834|gb|FC406673.1|FC406673
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCACCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67720570|gb|BJ970829.1|BJ970829
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAGAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162238304|gb|FC415872.1|FC415872
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|37849570|gb|BJ607578.1|BJ607578
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTACCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162220488|gb|FC396025.1|FC396025
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67698434|gb|BJ958667.1|BJ958667
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162238136|gb|FC414274.1|FC414274
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162244284|gb|FC419857.1|FC419857
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|37823743|gb|BJ581809.1|BJ581809
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162254273|gb|FC429992.1|FC429992
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67702078|gb|BJ962311.1|BJ962311
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAGAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162272612|gb|FC447731.1|FC447731
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162226049|gb|FC401327.1|FC401327
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|7286858|gb|AW599345.1|AW599345
EST:     GAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: GAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|37837467|gb|BJ595475.1|BJ595475
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162279790|gb|FC455698.1|FC455698
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162206022|gb|FC382807.1|FC382807
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162252224|gb|FC425902.1|FC425902
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|37822073|gb|BJ580139.1|BJ580139
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         NTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162252880|gb|FC429253.1|FC429253
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162211289|gb|FC387519.1|FC387519
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162220487|gb|FC396024.1|FC396024
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162272198|gb|FC448707.1|FC448707
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67700386|gb|BJ960619.1|BJ960619
EST:     AAGAGTAAAAAATGAACTGNTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: AAGAGT-AAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67716488|gb|BJ966748.1|BJ966748
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|208392372|gb|DC904232.1|DC904232
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162233140|gb|FC408963.1|FC408963
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162213727|gb|FC390342.1|FC390342
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162215298|gb|FC391066.1|FC391066
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162230835|gb|FC406674.1|FC406674
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162207896|gb|FC383602.1|FC383602
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|7584135|gb|AW700032.1|AW700032
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|18358100|gb|BJ190159.1|BJ190159
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|18375472|gb|BJ207050.1|BJ207050
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTACCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162226387|gb|FC403303.1|FC403303
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67576850|gb|BJ949674.1|BJ949674
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|6102401|gb|AW126871.1|AW126871
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162226881|gb|FC403069.1|FC403069
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67574998|gb|BJ947822.1|BJ947822
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162224425|gb|FC399801.1|FC399801
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162268526|gb|FC444399.1|FC444399
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|18344543|gb|BJ176584.1|BJ176584
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162254272|gb|FC429991.1|FC429991
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|67725002|gb|BJ975261.1|BJ975261
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162263612|gb|FC438874.1|FC438874
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|162238303|gb|FC415871.1|FC415871
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
EST: gi|208351271|gb|DC918130.1|DC918130
EST:     TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAG                         TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT
genomic: TCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 52

CCAAGATCAAAGTGCATGAGCTCCGCGCCAAGAGTAAAAATGAACTGCTCAGCCAGgtgtggtttc ... ataatcacagTTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT




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