1 5' 3' | 2 5' 3' | 3 5' 3' |
TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaattttttcttgaactgagcttgtaatccattgcatcgactggcgggctattgggcacttcgtagcagagaatgaacacagcaccgtgtggcgt...
species | Physcomitrella patens |
transcript | PP1S102_176V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATCTGCCCAAGTATTGATGAAGAAGCTAG CCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACGEST: gi|37823725|gb|BJ581791.1|BJ581791
genomic: TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaatt ... tttttcacagCCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACG
EST: TTATCTGCCCAAGTATTGATGAAGAAGCTAG CCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACGEST: gi|18344526|gb|BJ176567.1|BJ176567
genomic: TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaatt ... tttttcacagCCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACG
EST: TTATCTGCCCAAGTATTGATGAAGAAGCTAG CCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACGEST: gi|162219051|gb|FC394946.1|FC394946
genomic: TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaatt ... tttttcacagCCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACG
EST: TTATCTGCCCAAGTATTGATGAAGAAGCTAG CCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACG
genomic: TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaatt ... tttttcacagCCCAATGTTGATGGCAACGAAGCGTACTTTTCAACCCAGCACTATCAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCTGCCCAAGTATTGATGAAGAAGCTAGgtactcaattttttcttgaactgagcttgtaatccattgcatcgactggcgggctattgggcacttcgtagcagagaatgaacacagcaccgtgtggcgt
- - - - - - - - - TGAAGA
- - - - - - - - - - AAGAAG
- - - - - - - - - - - AGAAGC