1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGAGGGAGAAGGAGCTGCAACCAGACCGAGCCCAGGCCCAAGCTATATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacctccctctactttcacttactttcactagttttcttaaacttatgtgaaactgttgtttgttgatatagtagagtgtagtattcgtgtcttgacccaaccgagaaccacaagagctttgcttagaaacagtagctgatatctccaccgacgtgggttgcag
species | Physcomitrella patens |
transcript | PP1S9_366V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTATEST: gi|162204698|gb|FC381107.1|FC381107
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTATEST: gi|7287449|gb|AW599936.1|AW599936
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTATEST: gi|37840843|gb|BJ598851.1|BJ598851
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTATEST: gi|22131913|gb|BQ826874.1|BQ826874
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTATEST: gi|162181077|gb|FC357262.1|FC357262
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
EST: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAG TGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
genomic: TATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacct ... tgggttgcagTGGAAGCGACAAGAGGACCCGTACCGAGAATTCGTCCCACGGTTTCTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGGAGAAGGAGCTGCAACCAGACCGAGCCCAGGCCCAAGCTATATATAAACAAGTCGAGAGCGCTGTAGAGGAAGGATTAGAGTACCTGCAGgtttgaacctccctctactttcacttactttcactagttttcttaaacttatgtgaaactgttgtttgttgatatagtagagtgtagtattcgtgtcttgacccaaccgagaaccacaagagctttgcttagaaacagtagctgatatctccaccgacgtgggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG