1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCGAGTACGTCGACATGGTGAAGGCTGGAATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtacttttttcttccttggattctggcttgctgatccgcgcatcctgtccttcattgatgcccgagttttggggatccgtatgtttgtctctagcttgtt...
species | Physcomitrella patens |
transcript | PP1S149_289V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162198558|gb|FC373404.1|FC373404
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|208356851|gb|DC926862.1|DC926862
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162192962|gb|FC371945.1|FC371945
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162175003|gb|FC350902.1|FC350902
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162156171|gb|FC332546.1|FC332546
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162192963|gb|FC371946.1|FC371946
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGA-EST: gi|37838395|gb|BJ596403.1|BJ596403
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|67696511|gb|BJ956744.1|BJ956744
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: GATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162175002|gb|FC350901.1|FC350901
genomic: GATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|37850096|gb|BJ608104.1|BJ608104
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162268426|gb|FC444195.1|FC444195
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162234666|gb|FC410412.1|FC410412
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|208369434|gb|DC955895.1|DC955895
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162276484|gb|FC452682.1|FC452682
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162156170|gb|FC332545.1|FC332545
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162183371|gb|FC359286.1|FC359286
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|162268425|gb|FC444194.1|FC444194
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAAEST: gi|208366302|gb|DC947546.1|DC947546
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
EST: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAG CGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
genomic: ATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtactttttt ... ctgtgtgcagCGTTGCATCACTGATGACAACAACTGAAGCAGTAATTGCTGATTTCCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGTACGTCGACATGGTGAAGGCTGGAATTATTGATCCTGTAAAGGTTATTAGAACAGCTCTTGTTGATGCCGCTAGgtacttttttcttccttggattctggcttgctgatccgcgcatcctgtccttcattgatgcccgagttttggggatccgtatgtttgtctctagcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC