1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcgacacgaggttctaaatgttgtttgtttttttctggcttatttcttatgccgccttagttggctggttggtatttatgtacgttttatagc...
species | Physcomitrella patens |
transcript | PP1S180_53V6.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|208383274|gb|DC928260.1|DC928260
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGCEST: gi|37850897|gb|BJ608905.1|BJ608905
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|18332905|gb|BJ164918.1|BJ164918
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: AGTGCAATCATGNTANCCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|162172551|gb|FC348596.1|FC348596
genomic: AGTGCAATCATGCTA-CCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|208370481|gb|DC952184.1|DC952184
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|37839393|gb|BJ597401.1|BJ597401
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: ACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|208359219|gb|DC954156.1|DC954156
genomic: ACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTNCAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTEST: gi|37852526|gb|BJ610534.1|BJ610534
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcgacacgaggttctaaatgttgtttgtttttttctggcttatttcttatgccgccttagttggctggttggtatttatgtacgttttatagc
- - - CAAGCT
- - - - AAGCTG
- - - - AGCTGA