1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTATTCTGGATCTGGACGATTTGAGGAGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatcttttctactgtttcttctcttttggagtgtaaacccaatgtttgataagctaaacatcagccgcgacatgacaaactcgatatagcgatgt...
species | Physcomitrella patens |
transcript | PP1S9_366V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAAGATTTGTATATCCCATAACAAATATCAG GGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGCEST: gi|162204698|gb|FC381107.1|FC381107
genomic: GAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatct ... ctgatgttagGGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGC
EST: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAG GGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGCEST: gi|162181077|gb|FC357262.1|FC357262
genomic: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatct ... ctgatgttagGGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGC
EST: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAG GGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGCEST: gi|22492224|gb|BU052147.1|BU052147
genomic: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatct ... ctgatgttagGGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGC
EST: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAG GGGAGATCTCAATGAGGACGTAGGAGAACAGTCGCTTCACTTACCGEST: gi|162204699|gb|FC381108.1|FC381108
genomic: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatct ... ctgatgttagGGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCG
EST: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAG GGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGC
genomic: AGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatct ... ctgatgttagGGGAGATCTCAATGAGGACGTAGGAGACCAGTCGCTTCACTTACCGTTCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATTCTGGATCTGGACGATTTGAGGAGAATCCCAACTTTTGAAGAAAGATTTGTATATCCCATAACAAATATCAGgtgaagatcttttctactgtttcttctcttttggagtgtaaacccaatgtttgataagctaaacatcagccgcgacatgacaaactcgatatagcgatgt
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA