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CATGCCTGCAGGTGGAGTACAGAGGGTCGGACGGATTCGGTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatttaactcttcatgtagacttcttaaagcctaataaacagttaaatgtaacctcatactacataaatcccgcatgtgtatgtgtttacggaagatttagaggagcattttacttgggaacttatgcccttcagttgcaacaaagacctgaagcatacaactcatagcgtgaatgcgtttgagaacag
species | Physcomitrella patens |
transcript | PP1S9_317V6.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|162242963|gb|FC416472.1|FC416472
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAAGCTATGCGGACEST: gi|37827954|gb|BJ585966.1|BJ585966
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37829800|gb|BJ587812.1|BJ587812
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|162242962|gb|FC416471.1|FC416471
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: TTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|208350253|gb|DC925729.1|DC925729
genomic: TTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAANCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37824608|gb|BJ582674.1|BJ582674
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: AAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37829477|gb|BJ587489.1|BJ587489
genomic: AAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37829305|gb|BJ587317.1|BJ587317
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAG-TTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37841967|gb|BJ599975.1|BJ599975
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: TGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|162174855|gb|FC351647.1|FC351647
genomic: TGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37841095|gb|BJ599103.1|BJ599103
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: ACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|162252661|gb|FC428698.1|FC428698
genomic: ACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGACEST: gi|37825373|gb|BJ583439.1|BJ583439
genomic: GTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
EST: TTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAG GATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
genomic: TTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatt ... ttgagaacagGATGACGTTACCGATTCTGTGAAGTGGGCAATTGGAGAAGGCTATGCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCCTGCAGGTGGAGTACAGAGGGTCGGACGGATTCGGTAAAAAGTTTTTGCATGCTGGCGACAAGCAATGGGCAGCAGCCATGCAGgtcttaaatttaactcttcatgtagacttcttaaagcctaataaacagttaaatgtaacctcatactacataaatcccgcatgtgtatgtgtttacggaagatttagaggagcattttacttgggaacttatgcccttcagttgcaacaaagacctgaagcatacaactcatagcgtgaatgcgtttgagaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA