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21 5' 3' |
GTACGATTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacagtactttgtcttctatctatgtatctatctatccatatatatacacatacacacacacatttgtcacatgtaatgtacaaatgactagatt...
species | Physcomitrella patens |
transcript | PP1S180_53V6.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|208383274|gb|DC928260.1|DC928260
genomic: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|37850897|gb|BJ608905.1|BJ608905
genomic: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: GAAGAATTACGGACTNTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|162172551|gb|FC348596.1|FC348596
genomic: GAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|208370481|gb|DC952184.1|DC952184
genomic: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: TTGCGATGCGGCAACTACTATGGGG-TTTTGAAGAATTACGGACTCTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|208359219|gb|DC954156.1|DC954156
genomic: TTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: TACGGACTCTCAG ATGACTNCAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAEST: gi|37852526|gb|BJ610534.1|BJ610534
genomic: TACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
EST: TGAAGAATTACGGACTCTCAG ATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
genomic: TGAAGAATTACGGACTCTCAGgcacgaacag ... gttcttgcagATGACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGATTGGGATGCGGCAACTACTATGGGGTTTTTGAAGAATTACGGACTCTCAGgcacgaacagtactttgtcttctatctatgtatctatctatccatatatatacacatacacacacacatttgtcacatgtaatgtacaaatgactagatt
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA